spikeinterface

Docs for installation

https://github.com/SpikeInterface/spikeinterface

https://github.com/SpikeInterface/spikeinterface/tree/main/installation_tips

Docs for users

https://spikeinterface.readthedocs.io/en/latest/

From ICM

outside ICM

• install anaconda : https://www.anaconda.com/

• create new environement ex: spikeinterface

• open terminal in new environment

• install spikeinterface : pip install spikeinterface[full]

• if error: Microsoft Visual C++ 14.0 or greater is required.

Get it with "Microsoft C++ Build Tools": https://visualstudio.microsoft.com/visual-cpp-build-tools/ avec coché Developpement Desktop C++

• if error with hdbscan : install it manuall with : pip install hdbscan

• install numba pip install numba

• install jupyter notebook in the environemnt via the anaconda interface -> home

• in terminal go to directory where you want to save the scripts and launch jupyter :

  • ‘D:’

  • jupyter notebook

• install phy to visualize the outputs

  • conda install cython dask h5py joblib matplotlib numpy pillow pip pyopengl pyqt pyqtwebengine pytest python qtconsole requests responses scikit-learn scipy traitlets

  • pip install git+https://github.com/cortex-lab/phy.git