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Find and easily load/unload software at the center. |
Modules
Modules are a very convenient way to load preinstalled software. Some software (installed in collaboration with the DSI) should be used in a transparent manner with the module this tool, without worrying of any particular path. For the moment, it concerns Matlab, MNE-python and muse. To activate the module tool from a terminal:On
The module tool should readily be available in any terminal. Try the following:
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module av |
If this issues an error, then to activate the module tool with the following command on your workstation:
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source /etc/profile |
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module load MATLAB/R2017b module unload MATLAB/R2017b |
The same apply applies for MNE-python and muse:
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module load MNE/0.16 module load MNE/0.16.2 |
This efficient procedure works the same way on your workstation and on the cluster nodes, even if the list of available modules slightly differ. On your workstation, you should favor the modules listed in the "workstation" section (which is absent on the node), and then the others.
On your workstation (according to the computer you work on, which can be seen with the command lsb_release -a entered in a terminal):
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module load muse/1.9.30_centos module load muse/1.9.30_linuxmint |
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module load muse/1.9.30 |
Accessing other software directly
The software preinstalled on the computers of the CENIR for MEG-EEG analysis are stored in the following directory:
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If you decide to use a particular matlab toolbox (FieldTrip, BrainStorm, spm, eeglab etc) they are not installed in this directory. We strongly recommend that you download the latest version and install it in your local experiment directory and keep this version for your whole analysis. |
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