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2022/05/07

Owned by ZAHRAN Saeed (Unlicensed)
Last updated: Sept 26, 2022 by GEORGE Nathalie
1 min read

Due to the immigration of Lustre I lost libraries and software that was installed by DSI. I will start now to install them again as I am have the permission now to do that.

 

Anaconda:

wget https://repo.anaconda.com/archive/Anaconda3-2022.05-Linux-x86_64.sh

chmod +x Anaconda3-2022.05-Linux-x86_64.sh

./Anaconda3-2022.05-Linux-x86_64.sh

Anaconda3 will now be installed into this location:
/network/lustre/iss02/home/saeed.zahran/anaconda3

  • Press ENTER to confirm the location

  • Press CTRL-C to abort the installation

  • Or specify a different location below

[/network/lustre/iss02/home/saeed.zahran/anaconda3] >>>
ERROR: File or directory already exists: '/network/lustre/iss02/home/saeed.zahran/anaconda3'
If you want to update an existing installation, use the -u option.

 

So anaconda seems to be installed. I contacted the DSI and they solved the issue by updatin the init path of conda for iss02.

 

Pycharm

tar -xzvf pycharm-community-2021.3.3.tar.gz

cd pycharm-community-2021.3.3

cd bin

sh pycharm.sh

 

So now I will try to reproduce this results https://github.com/mne-tools/mne-biomag-group-demo

 

Freesurfer need to be setup again with mne:

cd freesurfer

pwd

export FREESURFER_HOME=$HOME/freesurfer

export SUBJECTS_DIR=$FREESURFER_HOME/subjects

source $FREESURFER_HOME/SetUpFreeSurfer.sh

which freeview