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Create a BIDS path using
mne_bids
Get all the info needed to create the events file
if we create fixed length events: we need to extract the event id
if we extract existing events we use
mne.read_events()
Convert the MEG file into a BIDS structure using
mne_bids.write_raw_bids()
and specify events_data and events_idExtract the
events.tsv
from the BIDS pathSave it in the output directory
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Note |
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This code works well on fixed length events but was not tested on data with existing events!!!! |
Delete the BIDS folder created
To get BIDS compliant events.tsv
and channels.tsv
, we created a BIDS folder. When the Apps creating these files run on Brainlife, the BIDS folder, which is useless, is in the outputs files. Besides, its presence may be confusing for the App users:
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So in main
, we add the line:
Code Block |
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rm -r bids |
after running the app.