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This file is supposed to be optional, so why an error is raised when it is not provided?
ask BL team
Error when running a pipeline with optional files
The Apps created as part of the MEEG Brainlife project are supposed to be run one after another. Thus the output of an App will be the input of another.
To test how it works, I decided to apply app-bad-channels and then app-maxfilter
First attempt:
app-bad-channels:no optional files present in file mappingapp-maxfilter: no optional files listes in file mapping
Result: it works fine
Second attempt:
app-bad-channels: optional files present in file mappingapp-maxfilter: optional files present in file mapping
Result: app-bad-channels works but app-maxfilter failed:
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OSError: trans file "../60618e5b750389e448ebecd7/out_dir_bad_channels/destination.fif" not found |
The optional file is indeed not in out_dir_bad_channels.
To solve this issue, I can save the optionnal files in out_dir_bad_channels, but a better way to circumvert may exist. Ask BL Team.