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  1. If you want to run only one App:

    1. go directly to the App and then execute it by clicking on “Execute”

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    2. BL creates a new process in the selected project, stages all of the input files you selected, and submits your App in a single step

  2. If you want to run a small pipeline:

    1. go to the page of the project linked to the App and then go the tab “Processes”

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      A Process is where you can submit one or a group of Apps that can share input/output datasets.

    2. create a new process

    3. stage any dataset from our archive to your process (each process can only process data that is either staged or generated by other Apps)

    4. select the App you want to run

    5. click submit

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If you have created a product.json, messages will be displayed directly in the Brainlife UI. For instance in the screenshot below, the success message “MaxFilter was applied successfully” was displayed . Error messages can be displayed as well if they are caught (see product.json).

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No need to catch error in the product.json, the error will be displayed anyway (see product.jsonscreenshot below).

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See also output.log for details displayed when the App was running.