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Apps for the preprocessing pipeline
- Aurore Bussalb (Unlicensed)
These Apps can be run both locally and on Brainlife. Besides, they can be run alone, or in a pipeline.
The entire pre-processing pipeline using the existing Apps is represented below:
Input files written in italic are optional.
Key points represented in this pipeline:
You can run either
app-head-posfirst orapp-mean-transformation, it doesn’t matterapp-head-pos,app-mean-transformation,app-bad-channels, andapp-maxwell-filterare MEG Elekta specificapp-notch-filter,app-temporal-filtering,app-resampling,app-get-events, andapp-make-epochscan be applied both on MEG and EEG dataapp-temporal-filteringandapp-resamplingcan be applied either on continuous or epoched data
Jun 4, 2021
At the moment, there is no datatype on Brainlife for EEG data. The app-notch-filter, app-temporal-filtering, app-resampling, app-get-events, and app-make-epochs takes EEG data when it is present in the .fif file (see Things to work on)